miRBase entry: pmi-mir-100

Stem-loop pmi-mir-100


Accession
MI0025104
Description
Patiria miniata pmi-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
1 open access papers mention pmi-mir-100
(4 sentences)

Sequence

auaccucugguccgcccaAACCCGUAGAUCCGAACUUGUguuggcuucauauucacagguucgaauccacagguccugggcuggcuggaacucgcauccugccuacca
.....(((((((.(((((.(((.((.(((.((((((((((.............)))))))))).))).)).)))..))))).)))))))....(((...)))......

Structure
--------------auacc       c     -A   C  A   C          uuggc 
                   ucugguc gccca  ACC GU GAU CGAACUUGUg     u
                   ||||||| |||||  ||| || ||| ||||||||||     u
                   aggucgg cgggu  ugg ca cua gcuuggacac     c
accauccguccuacgcuca       u     cc   a  c   a          uuaua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pmi-miR-100-5p

Accession MIMAT0032156
Description Patiria miniata pmi-miR-100-5p mature miRNA
Sequence 19 - AACCCGUAGAUCCGAACUUGU - 39
Evidence not_experimental

References

  1. PubMed ID: 23703796
    MicroRNAs support the monophyly of enteropneust hemichordates
    "Peterson KJ, Su YH, Arnone MI, Swalla B, King BL"
    "J Exp Zool B Mol Dev Evol (2013) 320:368-374