miRBase entry: pmi-mir-200

Stem-loop pmi-mir-200


Accession
MI0025113
Description
Patiria miniata pmi-mir-200 precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
1 open access papers mention pmi-mir-200
(1 sentences)

Sequence

guggCAUCAUACCGGACAGCAUUAGAcguggcgaucagcgggcucUAAUACUGUCUGGUAAUGAUGUuaaugguguucagagaugca
.((((((((((((((((((.((((((..(.((.....)).)..)))))).))))))))).)))))))))...(((((....))))).

Structure
-----------------g         -         C      cg g  g 
                  uggCAUCAU ACCGGACAG AUUAGA  u gc a
                  ||||||||| ||||||||| ||||||  | || u
                  auUGUAGUA UGGUCUGUC UAAUcu  g cg c
acguagagacuuguggua         A         A      cg g  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pmi-miR-200-5p

Accession MIMAT0032165
Description Patiria miniata pmi-miR-200-5p mature miRNA
Sequence 5 - CAUCAUACCGGACAGCAUUAGA - 26
Evidence not_experimental

Mature pmi-miR-200-3p

Accession MIMAT0032166
Description Patiria miniata pmi-miR-200-3p mature miRNA
Sequence 46 - UAAUACUGUCUGGUAAUGAUGU - 67
Evidence not_experimental

References

  1. PubMed ID: 23703796
    MicroRNAs support the monophyly of enteropneust hemichordates
    "Peterson KJ, Su YH, Arnone MI, Swalla B, King BL"
    "J Exp Zool B Mol Dev Evol (2013) 320:368-374