miRBase entry: lva-mir-2008

Stem-loop lva-mir-2008


Accession
MI0025175
Description
Lytechinus variegatus lva-mir-2008 precursor miRNA
Gene family
MIPF0000729; mir-2008


Sequence

uucuccacuuucuaccccGUAUUAACAAUGUGGCUGAUGAggaaucuuaugaaccaucagccucgcugucaauacgagguaaggagugacaa
.....((((((.((((.((((((.(((.((.((((((((.(...((....)).))))))))).)).))).)))))).)))).))))))....

Structure
uucuc      c    c      A   A  U        A gaa  u 
     cacuuu uacc cGUAUU ACA UG GGCUGAUG g   uc u
     |||||| |||| |||||| ||| || |||||||| |   ||  
     gugagg augg gcauaa ugu gc ccgacuac c   ag a
-aaca      a    a      c   c  u        - --a  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lva-miR-2008-5p

Accession MIMAT0032229
Description Lytechinus variegatus lva-miR-2008-5p mature miRNA
Sequence 19 - GUAUUAACAAUGUGGCUGAUGA - 40
Evidence not_experimental

References

  1. PubMed ID: 23703796
    MicroRNAs support the monophyly of enteropneust hemichordates
    "Peterson KJ, Su YH, Arnone MI, Swalla B, King BL"
    "J Exp Zool B Mol Dev Evol (2013) 320:368-374