Stem-loop sequence bta-mir-2285z

Accession

MI0025194 (change log)

Description

Bos taurus miR-2285z stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

11 open access papers mention bta-mir-2285z
(15 sentences)

Stem-loop

   uaauuua      -                        cc   cc   c 
5'        aaaugu guuggccagaaaguucauucaggu  uuc  uaa a
          |||||| ||||||||||||||||||||||||  |||  |||  
3'        uuuaca caaccgguuuuucaaguaagucca  aag  auu u
   --guuaa      a                        -a   ac   c 

Deep sequencing

13352 reads, 195 reads per million, 77 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr20: 13481341-13481436 [+]
• Overlapping transcripts:

  antisense

  ENSBTAT00000009630 ; SREK1-201; intron 19

Clustered miRNAs

< 10kb from bta-mir-2285z

• bta-mir-2285z: chr20: 13481341-13481436 [+]
• bta-mir-2285q: chr20: 13481349-13481431 [-]

Database links

• miRBase Tracker:MI0025194

Mature sequence bta-miR-2285z

• Accession: MIMAT0029950
• Sequence: 19 - ccagaaaguucauucagguccu - 40
• Deep sequencing: 51 reads, 26 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2285z

References

1. PMID:23100578 "Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing" Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K J Anim Sci. 91:90-103(2013).