Stem-loop osa-MIR7693

Accession

MI0025200

Description

Oryza sativa osa-MIR7693 precursor miRNA

Literature search

1 open access papers mention osa-MIR7693
(1 sentences)

Sequence

186 reads, 174 reads per million, 2 experiments

gggcgaugaggaaucuucuggaagguguggugccacuccggcagucgcagccuccucaacaugggaauggcgacaguuggguugaggaggcuagagGUUUCCGCUCUUCAUCGAUGGCUGucuguccuugccuccucggcccucgcugccgaugaagaacaagaaguuauccggcggcgagggccgaggaggugaggacgGACGUCCAUCGAUGAAGAGCGAaaaccuccagccuccucaacucaauugccgacauucccauguugaggaggcugccacugccggaguggcaccgcaccuuccaaaagauuccucaucgcc
.((((((((((((((((.(((((((((((((((((((((((((((.(((((((((((((((((((((((.((.(((((((((((((((((((.(((((((.((((((((((((((((.(((((((((((((((((((((((((((((((((..((..(((.....))).))))))))))))))))))))))))))))))))))).)))))))))))))))).))))))).))))))))))))))))))).)).))))))))))))))))))))))).))))))))))))))))))))))))))).))))))))))))))))

Structure

g                c                           c                       g  a                   a       C                C                                 au  ag   a 
 ggcgaugaggaaucuu uggaagguguggugccacuccggcagu gcagccuccucaacaugggaaug cg caguuggguugaggaggcu gagGUUU CGCUCUUCAUCGAUGG UGucuguccuugccuccucggcccucgcugccg  ga  aac a
 |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||  ||  ||| g
 ccgcuacuccuuagaa accuuccacgccacggugaggccguca cgucggaggaguuguacccuuac gc guuaacucaacuccuccga cuccaaa GCGAGAAGUAGCUACC GCAGgcaggaguggaggagccgggagcggcggc  cu  uug a
-                a                           c                       a  c                   c       A                U                                 --  -a   a 

Annotation confidence Low

Genome context

Chr12: 25875099-25875419 [-]

Mature osa-miR7693-5p

• Accession: MIMAT0029957
• Description: Oryza sativa osa-miR7693-5p mature miRNA
• Sequence: 97 - GUUUCCGCUCUUCAUCGAUGGCUG - 120
• Evidence: experimental ; 454 [1]

Mature osa-miR7693-3p

• Accession: MIMAT0029958
• Description: Oryza sativa osa-miR7693-3p mature miRNA
• Sequence: 201 - GACGUCCAUCGAUGAAGAGCGA - 222
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 23627500
   Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance
   "Campo S, Peris-Peris C, Sire C, Moreno AB, Donaire L, Zytnicki M, Notredame C, Llave C, San Segundo B"
   "New Phytol (2013) 199:212-227