Stem-loop sequence mtr-MIR2664b

Accession

MI0025215 (change log)

Description

Medicago truncatula miR2664b stem-loop

Gene family

MIPF0001740; MIR2664

Stem-loop

   ---------uuauaaaaaaaaaaa        u              g               a  a               c    a     a    aucaauuaacgauuuu 
5'                         aguuuaau gugguggguugaca uccaaaacaguuuug ac uacaaucaaucaaaa auuu gaauc ccac                a
                           |||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||| |||| ||||| ||||                 
3'                         ucaaauua caccacucaacugu agguuuugucaaaac ug auguugguuaguuuu uaag cuuag ggug                a
   uaguauuaaccauaaaauaaaaac        c              a               g  c               a    a     c    caaaccagguauacuu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr6: 22852049-22852269 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025215

Mature sequence mtr-miR2664b

• Accession: MIMAT0029975
• Sequence: 21 - aauugugguggguugacaguc - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).