Stem-loop sequence mtr-MIR319c

Accession

MI0025219 (change log)

Description

Medicago truncatula miR319c stem-loop

Gene family

MIPF0001104; MIR319

Literature search

5 open access papers mention mtr-MIR319c
(16 sentences)

Stem-loop

   c    a            g   c       -------    a  g  a 
5'  agaa ugggaguuccuu cag ccaaagc       gcca gu ag a
    |||| |||||||||||| ||| |||||||       |||| || ||  
3'  ucuu acccucgaggga guc gguuuug       cggu ca uc u
   u    g            a   a       uauuaaa    -  -  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): contig_50311: 658-746 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025219

Mature sequence mtr-miR319c-5p

• Accession: MIMAT0029980
• Sequence: 9 - ggaguuccuugcagcccaaag - 29
• Evidence: experimental; Illumina [1]

Mature sequence mtr-miR319c-3p

• Accession: MIMAT0029981
• Sequence: 63 - uuggacugaagggagcuccca - 83
• Evidence: experimental; Illumina [1]

References

1. PMID:23572382 "microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula" Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N Planta. 238:91-105(2013).