Stem-loop mtr-MIR319d

Accession

MI0025220

Description

Medicago truncatula mtr-MIR319d precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

5 open access papers mention mtr-MIR319d
(16 sentences)

Sequence

agaaaaauaguucaagAGAGCUCUCUUCAGUCCACUCauggauaggaaaagguuuugaauuagcugcugacucauucauucaaacacaauaagaagaagcaugaugaauaugcuauauugugaaugugugaaugaugcgggagcuaaauuucaucuuucucuugucuuugcUUGGACUGAAGGGAGCUCCCUuuugcuguuuauaua
....(((((((..(((.(((((((((((((((((..((.((((((((.((((...((((((((((.(((..((((((((.((..(((((((......((((((.....)))))).)))))))..)).))))))))..))).))))))..)))).)))).)))))))).))..))))))))))))))))).)))..))))))).....

Structure

-agaa       uc   A                 CU  u        a    uuu    --      g   ac        u  aa       agaaga      a 
     aaauagu  aag GAGCUCUCUUCAGUCCA  Ca ggauagga aagg   ugaa  uuagcu cug  ucauucau ca  cacaaua      agcaug u
     |||||||  ||| |||||||||||||||||  || |||||||| ||||   ||||  |||||| |||  |||||||| ||  |||||||      |||||| g
     uuugucg  uUC CUCGAGGGAAGUCAGGU  gu ucuguucu uuuc   acuu  aaucga ggc  aguaagug gu  guguuau      ucguau a
auaua       uu   C                 Uc  u        c    --u    ua      g   gu        u  aa       -----a      a 

Annotation confidence Not enough data

Genome context

chr3: 19927077-19927283 [+]

Mature mtr-miR319d-5p

• Accession: MIMAT0029982
• Description: Medicago truncatula mtr-miR319d-5p mature miRNA
• Sequence: 17 - AGAGCUCUCUUCAGUCCACUC - 37
• Evidence: experimental ; Illumina [1]

Mature mtr-miR319d-3p

• Accession: MIMAT0029983
• Description: Medicago truncatula mtr-miR319d-3p mature miRNA
• Sequence: 172 - UUGGACUGAAGGGAGCUCCCU - 192
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105