miRBase entry: mtr-MIR399s

Stem-loop mtr-MIR399s


Accession
MI0025231
Description
Medicago truncatula mtr-MIR399s precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
9 open access papers mention mtr-MIR399s
(22 sentences)

Sequence

ugcaguugaauuacaGGGUGAGUUCUCCAUUGGCAGGuagcuagucacuauaugauaugcauugcaaucauuucuuagugugcaaucUGCCAAAGGAGAUUUGCCCAGcgauucuccugcaac
(((((..(((((.(.((((((((.((((.(((((((((.((....(((((.(((((.(((...))))))))....))))).)).))))))))).)))))))))))).).)))))..)))))..

Structure
--     uu     a a        U    A         a  uagu     ---u     a   a 
  ugcag  gaauu c GGGUGAGU CUCC UUGGCAGGu gc    cacua    augau ugc  
  |||||  ||||| | |||||||| |||| ||||||||| ||    |||||    ||||| ||| u
  acguc  cuuag G CCCGUUUA GAGG AACCGUcua cg    gugau    uacua acg  
ca     cu     c A        -    A         a  ---u     ucuu     -   u 


Annotation confidence Not enough data
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Genome context
chr8: 23989511-23989633 [+]

Database links

Mature mtr-miR399s-5p

Accession MIMAT0030003
Description Medicago truncatula mtr-miR399s-5p mature miRNA
Sequence 16 - GGGUGAGUUCUCCAUUGGCAGG - 37
Evidence experimental
Illumina [1]

Mature mtr-miR399s-3p

Accession MIMAT0030004
Description Medicago truncatula mtr-miR399s-3p mature miRNA
Sequence 88 - UGCCAAAGGAGAUUUGCCCAG - 108
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23572382
    microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
    "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
    "Planta (2013) 238:91-105