Stem-loop mtr-MIR2592bp

Accession

MI0025234

Description

Medicago truncatula mtr-MIR2592bp precursor miRNA

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592bp
(2 sentences)

Sequence

aauaugaguguuacaAAAUGCUUGAGUCCUGUUGUUuggccaguuugaauuuaccccauucagagguaacaaauuguuguaguuguaagguacaaacguucgguauaaacguccaaaagaucaaggaaugaaugcaccuuccaacugcaacaauugucuuccuuugaaugggguaauucaaacuuguuaaaCGGCAGAACUCCAGCAUUCGAugagcaucuugaa
.....(((((((.((.((((((.((((.((((((((((((.((((((((((.((((((((((((((.....((((((((((((((.(((((.((..(((((........................)))))..)).))))).)))))))))))))).....)))))))))))))))))))))))).)))))))))))).)))).))))))...)))))).)))...

Structure

aauau   -    a  --A      U    C            c          u              uaaca              u     a  aa     gguauaaacgu 
     gag uguu ca   AAUGCU GAGU CUGUUGUUuggc aguuugaauu accccauucagagg     aauuguuguaguug aaggu ca  cguuc           c
     ||| |||| ||   |||||| |||| |||||||||||| |||||||||| ||||||||||||||     |||||||||||||| ||||| ||  |||||            
     uuc acga gu   UUACGA CUCA GACGGCaaauug ucaaacuuaa ugggguaaguuucc     uuaacaacgucaac uucca gu  guaag           c
--aag   u    -  AGC      C    A            u          -              uucug              c     c  aa     gaacuagaaaa 

Annotation confidence Not enough data

Genome context

chr5: 934556-934780 [+]

Mature mtr-miR2592bp-5p

• Accession: MIMAT0030009
• Description: Medicago truncatula mtr-miR2592bp-5p mature miRNA
• Sequence: 16 - AAAUGCUUGAGUCCUGUUGUU - 36
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2592bp-3p

• Accession: MIMAT0030010
• Description: Medicago truncatula mtr-miR2592bp-3p mature miRNA
• Sequence: 192 - CGGCAGAACUCCAGCAUUCGA - 212
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105