Stem-loop mtr-MIR2592bq

Accession

MI0025235

Description

Medicago truncatula mtr-MIR2592bq precursor miRNA

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592bq
(2 sentences)

Sequence

aauucaaacuugccaaaCGACCAUGACUCAAGUAUUAAgcccagcguucauauuuuuccuuugaaaagauuaaauucuuguuaugcugguuuagaugaagguauuaagugucaaugaaugaaccucauuucguuggcacuugaauaccaucaucuaaagcaagccuaacaaaaauuuauuauuuucaaagaaaaaacaugaacgcggggcgAAAUGCUUGAGUCAUGUUGUUuggccaguuuaaauu
((((.(((((.((((((((((.((((((((((((((..((((.((((((((.(((((.(((((((((...((((((.((((((.((((.(((((((((.((((((((((((((((((((((...))).)))))))))))))).))))).))))))))).).))).)))))).))))))...))))))))).))))).)))))))).))))..)))))))))))))))))))))))).))))).))))

Structure

    c     u          C              AA    a        a     c         gau      c      u   - g         a     -              -   a 
aauu aaacu gccaaaCGAC AUGACUCAAGUAUU  gccc gcguucau uuuuu cuuugaaaa   uaaauu uuguua gcu g uuuagauga gguau uaagugucaaugaa uga  
|||| ||||| |||||||||| ||||||||||||||  |||| |||||||| ||||| |||||||||   |||||| |||||| ||| | ||||||||| ||||| |||||||||||||| ||| c
uuaa uuuga cgguUUGUUG UACUGAGUUCGUAA  cggg cgcaagua aaaaa gaaacuuuu   auuuaa aacaau cga c aaaucuacu ccaua guucacgguugcuu acu  
    a     c          -              Ag    g        c     a         auu      a      c   a g         a     a              u   c 

Annotation confidence Not enough data

Genome context

chr5: 3215835-3216081 [+]

Mature mtr-miR2592bq-5p

• Accession: MIMAT0030011
• Description: Medicago truncatula mtr-miR2592bq-5p mature miRNA
• Sequence: 18 - CGACCAUGACUCAAGUAUUAA - 38
• Evidence: experimental ; Illumina [1]

Mature mtr-miR2592bq-3p

• Accession: MIMAT0030012
• Description: Medicago truncatula mtr-miR2592bq-3p mature miRNA
• Sequence: 212 - AAAUGCUUGAGUCAUGUUGUU - 232
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105