Stem-loop sequence mtr-MIR2592br

Accession

MI0025236 (change log)

Description

Medicago truncatula miR2592br stem-loop

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592br
(2 sentences)

Stem-loop

               c        u                g                 u         a  u      -c       g  - g         a     -          -      a 
5' aauucaaacuug caaacgac aggacucaaguauuuc cucggcauucauguuuu ccuuugaaa ga uaaauu  uuguuag cu g uuuagauga gguau uaagugucaa ggaaug a
   |||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| ||||||||| || ||||||  ||||||| || | ||||||||| ||||| |||||||||| |||||| c
3' uuaaguuugaac guuuguug uccugaguucguaaag gggccguaaguacaaaa ggaaacuuu cu auuuaa  aauaauu ga c aaaucuacu ccaua guucacgguu cuuuac c
               a        -                g                 -         -  u      aa       g  a g         a     a          g      u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr2: 15307805-15308050 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025236

Mature sequence mtr-miR2592br-5p

• Accession: MIMAT0030013
• Sequence: 19 - gacuaggacucaaguauuucg - 39
• Evidence: experimental; Illumina [1]

Mature sequence mtr-miR2592br-3p

• Accession: MIMAT0030014
• Sequence: 211 - aaaugcuugaguccuguuguu - 231
• Evidence: experimental; Illumina [1]

References

1. PMID:23572382 "microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula" Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N Planta. 238:91-105(2013).