miRBase entry: oar-let-7d

Stem-loop oar-let-7d


Accession
MI0025244
Description
Ovis aries oar-let-7d precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
12 open access papers mention oar-let-7d
(39 sentences)

Sequence

18357 reads, 3300 reads per million, 13 experiments
ccuaggaAGAGGUAGUAGGUUGCAUAGuuuuagggcagggauuuugcccacaaggagguaacuauacgaccugcugccuuucuuagg
(((((((.((((((((((((((.((((((...((((((.....))))))..........)))))).)))))))))))))))))))))

Structure
       A              C      -------uua      g 
ccuagga GAGGUAGUAGGUUG AUAGuu          gggcag g
||||||| |||||||||||||| ||||||          |||||| a
ggauucu uuccgucguccagc uaucaa          cccguu u
       -              a      uggaggaaca      u 


Annotation confidence Not enough data
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Genome context
chr2: 27327398-27327484 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oar-let-7d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-let-7d

Accession MIMAT0030023
Description Ovis aries oar-let-7d mature miRNA
Sequence 8 - AGAGGUAGUAGGUUGCAUAG - 27
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23269700
    MicroRNA in the ovine mammary gland during early pregnancy: spatial and temporal expression of miR-21, miR-205, and miR-200
    "Galio L, Droineau S, Yeboah P, Boudiaf H, Bouet S, Truchet S, Devinoy E"
    "Physiol Genomics (2013) 45:151-161