miRBase entry: oar-mir-19b

Stem-loop oar-mir-19b


Accession
MI0025263
Description
Ovis aries oar-mir-19b precursor miRNA
Gene family
MIPF0000011; mir-19

Literature search
5 open access papers mention oar-mir-19b
(16 sentences)

Sequence

654387 reads, 131535 reads per million, 13 experiments
cacuguucuaugguuaguuuugcagguuugcauccagcugugugauauucugcUGUGCAAAUCCAUGCAAAACUGAcugugguagug
(((((..(((((((((((((((((((((((((..((((.............)))))))))).)).))))))))))))))))))))))

Structure
     uu                 -  -      uc    ugugu 
cacug  cuaugguuaguuuugca gg uuugca  cagc     g
|||||  ||||||||||||||||| || ||||||  ||||     a
gugau  ggugucAGUCAAAACGU CC AAACGU  GUcg     u
     --                 A  U      --    ucuua 


Annotation confidence High
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Genome context
chr10: 66142232-66142318 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oar-mir-19b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-19b

Accession MIMAT0030041
Description Ovis aries oar-miR-19b mature miRNA
Sequence 54 - UGUGCAAAUCCAUGCAAAACUGA - 76
Evidence experimental
cloned [1]

References

  1. PubMed ID: 23269700
    MicroRNA in the ovine mammary gland during early pregnancy: spatial and temporal expression of miR-21, miR-205, and miR-200
    "Galio L, Droineau S, Yeboah P, Boudiaf H, Bouet S, Truchet S, Devinoy E"
    "Physiol Genomics (2013) 45:151-161