Stem-loop ama-MIR396

Accession

MI0025287

Description

Avicennia marina ama-MIR396 precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

1 open access papers mention ama-MIR396
(4 sentences)

Sequence

gcuaUUCCACAGCUUUCUUGAACUUucuugaacugcuuuuuauaauuuuuguauauagcaccauacauggAAGCUCAAGAAAGCUGUGGGAaaac
....(((((((((((((((((.(((((.((...((((...(((((...)))))...)))).....)).))))).)))))))))))))))))....

Structure

gcua                 A     u  --aac    uuu     u 
    UUCCACAGCUUUCUUGA CUUuc ug     ugcu   uauaa  
    ||||||||||||||||| ||||| ||     ||||   ||||| u
    AGGGUGUCGAAAGAACU GAAgg ac     acga   auguu  
caaa                 C     u  auacc    uau     u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ama-miR396-5p

• Accession: MIMAT0031154
• Description: Avicennia marina ama-miR396-5p mature miRNA
• Sequence: 5 - UUCCACAGCUUUCUUGAACUU - 25
• Evidence: experimental ; Illumina [1]

Mature ama-miR396-3p

• Accession: MIMAT0031155
• Description: Avicennia marina ama-miR396-3p mature miRNA
• Sequence: 71 - AAGCUCAAGAAAGCUGUGGGA - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23593307
   Identification and analysis of red sea mangrove (Avicennia marina) microRNAs by high-throughput sequencing and their association with stress responses
   Khraiwesh B, Pugalenthi G, Fedoroff NV
   PLoS One (2013) 8:e60774