Stem-loop bdi-MIR167e

Accession

MI0025298

Description

Brachypodium distachyon bdi-MIR167e precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

2 open access papers mention bdi-MIR167e
(7 sentences)

Sequence

caugugcaccauacaagcuggUGAAGCUGCCAGCAUGAUCUGAucugaccauauaucuagauuggcauggauggauaugugauaugaucugaucAGGUCAUGCUGGAGUUUCAUCugcugguuggg
........(((..((.((.(((((((((.((((((((((((((((.(((((((((((((............))))))))))....).)).))))))))))))))))))))))))).))))..))).

Structure

caugugca   ua  a  u         G                u  - ----          gauug 
        cca  ca gc ggUGAAGCU CCAGCAUGAUCUGAuc ga c    cauauaucua     g
        |||  || || ||||||||| |||||||||||||||| || |    ||||||||||      
        ggu  gu cg CUACUUUGA GGUCGUACUGGAcuag cu g    guguauaggu     c
-------g   ug  -  u         -                u  a uaua          aggua 

Annotation confidence Not enough data

Genome context

4: 1641440-1641565 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR167e

Mature bdi-miR167e-5p

• Accession: MIMAT0030091
• Description: Brachypodium distachyon bdi-miR167e-5p mature miRNA
• Sequence: 22 - UGAAGCUGCCAGCAUGAUCUGA - 43
• Evidence: experimental ; Illumina [1-2]

Mature bdi-miR167e-3p

• Accession: MIMAT0030092
• Description: Brachypodium distachyon bdi-miR167e-3p mature miRNA
• Sequence: 95 - AGGUCAUGCUGGAGUUUCAUC - 115
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443


2. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145