Stem-loop bdi-MIR5167b

Accession

MI0025302

Description

Brachypodium distachyon bdi-MIR5167b precursor miRNA

Gene family

MIPF0001714; MIR5167

Sequence

gucauucgugcUCUAGUUAAGGUAAUUUAACUagaagauagaaaucuagauuuuuuuauguuaccuuccaccauggcgcgacagaaaagaacgacauuggcaucgaggcacaugucguucgggaauuaacuuccaggaaagcaauauaaagaauuuagacuccuagccuucgagUGUGAAUUGCCUUAACGAGAGCaccaaugaca
((((((.(((((((.(((((((((((((((((.((((.(((...((((((((((((.(((((.(.((((....((......)).....(((((((((..((......))..)))))))))((((......)))).)))).).)))))))))))))))))...)))..)))).))).)))))))))))))).))))))).)))))).

Structure

-      c       A              -   a    -a   aaa            u     a c    accauggcgcgacagaaaa         ug  au 
 gucauu gugcUCU GUUAAGGUAAUUUA ACU gaag  uag   ucuagauuuuuu auguu c uucc                   gaacgacau  gc  c
 |||||| ||||||| |||||||||||||| ||| ||||  |||   |||||||||||| ||||| | ||||                   |||||||||  ||   
 caguaa caCGAGA CAAUUCCGUUAAGU Uga cuuc  auc   agauuuaagaaa uauaa g aagg                   cuugcugua  cg  g
a      c       G              G   g    cg   cuc            -     c a    ----accuucaauuaaggg         ca  ga 

Annotation confidence Not enough data

Genome context

4: 42129670-42129875 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR5167b

Mature bdi-miR5167b-5p

• Accession: MIMAT0030099
• Description: Brachypodium distachyon bdi-miR5167b-5p mature miRNA
• Sequence: 12 - UCUAGUUAAGGUAAUUUAACU - 32
• Evidence: experimental ; Illumina [1]

Mature bdi-miR5167b-3p

• Accession: MIMAT0030100
• Description: Brachypodium distachyon bdi-miR5167b-3p mature miRNA
• Sequence: 175 - UGUGAAUUGCCUUAACGAGAGC - 196
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443