miRBase entry: bdi-MIR5174d

Stem-loop bdi-MIR5174d


Accession
MI0025305
Description
Brachypodium distachyon bdi-MIR5174d precursor miRNA
Gene family
MIPF0001200; MIR5067

Literature search
1 open access papers mention bdi-MIR5174d
(3 sentences)

Sequence

uucaacugauuUCCCUCCGUUUCAUAAAGAUUGGCacggauuugaacuaaaccuaguuuaaagccaugcCAAUCUUUAUGGAACGGAGAGAGUacuuguguguc
....((....(((.((((((((((((((((((((((.((.(((((((((....))))))))).)).)))))))))))))))))))))).))).....)).....

Structure
-uuca  -ugau   C                      c  a         a 
     ac     uUC CUCCGUUUCAUAAAGAUUGGCa gg uuugaacua a
     ||     ||| |||||||||||||||||||||| || |||||||||  
     ug     GAG GAGGCAAGGUAUUUCUAACcgu cc aaauuugau c
cugug  uucaU   A                      a  g         c 


Annotation confidence Not enough data
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Genome context
1: 36001972-36002075 [-]

Database links

Mature bdi-miR5174d-5p

Accession MIMAT0030105
Description Brachypodium distachyon bdi-miR5174d-5p mature miRNA
Sequence 12 - UCCCUCCGUUUCAUAAAGAUUGGC - 35
Evidence experimental
Illumina [1]

Mature bdi-miR5174d-3p

Accession MIMAT0030106
Description Brachypodium distachyon bdi-miR5174d-3p mature miRNA
Sequence 70 - CAAUCUUUAUGGAACGGAGAGAGU - 93
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443