miRBase entry: bdi-MIR5185f

Stem-loop bdi-MIR5185f


Accession
MI0025310
Description
Brachypodium distachyon bdi-MIR5185f precursor miRNA
Gene family
MIPF0001246; MIR5185

Literature search
1 open access papers mention bdi-MIR5185f
(1 sentences)

Sequence

gaucccgcggaagucccgcUUCUAGUUCAUUUUUCAAAUCuucuauuccaaauuuuguucagaauuugaauaagagaUUUGAGAAUUGAACUAGAAGCaggacuuucgcg
.....(((((((((((.((((((((((((.((((((((((((.(((((.(((((((....)))))))))))).)))))))))))).)))))))))))).)))))))))))

Structure
gaucc           c            U            c     c       g 
     cgcggaagucc gcUUCUAGUUCA UUUUCAAAUCuu uauuc aaauuuu u
     ||||||||||| |||||||||||| |||||||||||| ||||| |||||||  
     gcgcuuucagg CGAAGAUCAAGU AAGAGUUUagag auaag uuuaaga u
-----           a            U            a     -       c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
3: 44959226-44959335 [-]

Database links

Mature bdi-miR5185f-5p

Accession MIMAT0030115
Description Brachypodium distachyon bdi-miR5185f-5p mature miRNA
Sequence 20 - UUCUAGUUCAUUUUUCAAAUC - 40
Evidence experimental
Illumina [1]

Mature bdi-miR5185f-3p

Accession MIMAT0030116
Description Brachypodium distachyon bdi-miR5185f-3p mature miRNA
Sequence 78 - UUUGAGAAUUGAACUAGAAGC - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443