miRBase entry: bdi-MIR5185k

Stem-loop bdi-MIR5185k


Accession
MI0025315
Description
Brachypodium distachyon bdi-MIR5185k precursor miRNA
Gene family
MIPF0001246; MIR5185

Literature search
1 open access papers mention bdi-MIR5185k
(1 sentences)

Sequence

gaucccgcaaaagucccgcUUCUAGUUCAUUUUUCAAAUCuucuauucaaaauuuuguucagaauuugaauaggagaUUUGAGAAUUGAACUAGAAGCaggacuuucgcg
.....(((.(((((((.((((((((((((.(((((((((((((((((((((.((((....))))))))))))))))))))))))).)))))))))))).))))))).)))

Structure
gaucc   a       c            U                     a    g 
     cgc aaagucc gcUUCUAGUUCA UUUUCAAAUCuucuauucaaa uuuu u
     ||| ||||||| |||||||||||| ||||||||||||||||||||| ||||  
     gcg uuucagg CGAAGAUCAAGU AAGAGUUUagaggauaaguuu aaga u
-----   c       a            U                     -    c 


Annotation confidence Not enough data
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Genome context
5: 24868302-24868411 [-]

Database links

Mature bdi-miR5185k-5p

Accession MIMAT0030125
Description Brachypodium distachyon bdi-miR5185k-5p mature miRNA
Sequence 20 - UUCUAGUUCAUUUUUCAAAUC - 40
Evidence experimental
Illumina [1]

Mature bdi-miR5185k-3p

Accession MIMAT0030126
Description Brachypodium distachyon bdi-miR5185k-3p mature miRNA
Sequence 78 - UUUGAGAAUUGAACUAGAAGC - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443