miRBase entry: bdi-MIR7709

Stem-loop bdi-MIR7709


Accession
MI0025320
Description
Brachypodium distachyon bdi-MIR7709 precursor miRNA


Sequence

cugcccaauggcauUAAAGUAUGACUAGGCACACGuccuugucucaucaugagaccaacgccuugaugugacgaaaaagcuccaucuuuuaggugucggcaaggacacacccuacacccuuauuguucugugggucgugacccucguguugcuuagugccaggacauacccuauuggucgugcgggccuuggugcucacgugucuugugaaaggccaaggcccacccggccagaaggguguggcuuggagcuaggccgcgugagggccaaggcccacacgaccaaaaacgucuguccuggcccaugccucaaaguugcagcuucgucgcaucggggcacgugaggaggcagggcgUGUGCCUAGUCGUACUUUGAUggcauaaaaaaau
.......(((.((((((((((((((((((((((((((((.(((((.(((((........(((((((((((((((...((((.((.((((.((((((.(((.((((((.((............(((.((((((((((.((.(((((((((.(((((((.(((((.((((((((.(((((((.(.((((((((((..(((((.....)))))...)))))))))).).))))))).)))))))).))))).))))))).))))))))).)).)))))))).)).)))....)).)))))).))).)))))).)))).)).))))))))))))))))))).))))).))))))))))))))))))))))))))))))))).)))........

Structure
-cugccca   g                            u     a     agaccaac               aaa    c  u    u      c   a      c  ccuacacccuua   u  -        g  a         u       g     a        a       u c          -gc     u 
        aug cauUAAAGUAUGACUAGGCACACGuccu gucuc ucaug        gccuugaugugacga   agcu ca cuuu aggugu ggc aggaca ac            uug uc uguggguc ug cccucgugu gcuuagu ccagg cauacccu uuggucg g gggccuuggu   ucacg g
        ||| |||||||||||||||||||||||||||| ||||| |||||        |||||||||||||||   |||| || |||| |||||| ||| |||||| ||            ||| || |||||||| || ||||||||| ||||||| ||||| |||||||| ||||||| | ||||||||||   ||||| u
        uac gUAGUUUCAUGCUGAUCCGUGUgcggga cggag agugc        cggggcuacgcugcu   ucga gu gaaa uccgua ccg uccugu ug            aac ag acacccgg ac gggagugcg cggaucg gguuc guguggga gaccggc c cccggaaccg   agugu c
uaaaaaaa   g                            -     g     -------a               ---    c  u    c      c   g      c  --------caaa   c  c        a  c         c       a     g        a       c a          gaa     u 


Annotation confidence Not enough data
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Genome context
3: 18724294-18724682 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bdi-MIR7709
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR7709-5p

Accession MIMAT0030135
Description Brachypodium distachyon bdi-miR7709-5p mature miRNA
Sequence 15 - UAAAGUAUGACUAGGCACACG - 35
Evidence experimental
Illumina [1]

Mature bdi-miR7709-3p

Accession MIMAT0030136
Description Brachypodium distachyon bdi-miR7709-3p mature miRNA
Sequence 356 - UGUGCCUAGUCGUACUUUGAU - 376
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443