Stem-loop bdi-MIR7709

Accession

MI0025320

Description

Brachypodium distachyon bdi-MIR7709 precursor miRNA

Sequence

cugcccaauggcauUAAAGUAUGACUAGGCACACGuccuugucucaucaugagaccaacgccuugaugugacgaaaaagcuccaucuuuuaggugucggcaaggacacacccuacacccuuauuguucugugggucgugacccucguguugcuuagugccaggacauacccuauuggucgugcgggccuuggugcucacgugucuugugaaaggccaaggcccacccggccagaaggguguggcuuggagcuaggccgcgugagggccaaggcccacacgaccaaaaacgucuguccuggcccaugccucaaaguugcagcuucgucgcaucggggcacgugaggaggcagggcgUGUGCCUAGUCGUACUUUGAUggcauaaaaaaau
.......(((.((((((((((((((((((((((((((((.(((((.(((((........(((((((((((((((...((((.((.((((.((((((.(((.((((((.((............(((.((((((((((.((.(((((((((.(((((((.(((((.((((((((.(((((((.(.((((((((((..(((((.....)))))...)))))))))).).))))))).)))))))).))))).))))))).))))))))).)).)))))))).)).)))....)).)))))).))).)))))).)))).)).))))))))))))))))))).))))).))))))))))))))))))))))))))))))))).)))........

Structure

-cugccca   g                            u     a     agaccaac               aaa    c  u    u      c   a      c  ccuacacccuua   u  -        g  a         u       g     a        a       u c          -gc     u 
        aug cauUAAAGUAUGACUAGGCACACGuccu gucuc ucaug        gccuugaugugacga   agcu ca cuuu aggugu ggc aggaca ac            uug uc uguggguc ug cccucgugu gcuuagu ccagg cauacccu uuggucg g gggccuuggu   ucacg g
        ||| |||||||||||||||||||||||||||| ||||| |||||        |||||||||||||||   |||| || |||| |||||| ||| |||||| ||            ||| || |||||||| || ||||||||| ||||||| ||||| |||||||| ||||||| | ||||||||||   ||||| u
        uac gUAGUUUCAUGCUGAUCCGUGUgcggga cggag agugc        cggggcuacgcugcu   ucga gu gaaa uccgua ccg uccugu ug            aac ag acacccgg ac gggagugcg cggaucg gguuc guguggga gaccggc c cccggaaccg   agugu c
uaaaaaaa   g                            -     g     -------a               ---    c  u    c      c   g      c  --------caaa   c  c        a  c         c       a     g        a       c a          gaa     u 

Annotation confidence Not enough data

Genome context

3: 18724294-18724682 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR7709

Mature bdi-miR7709-5p

• Accession: MIMAT0030135
• Description: Brachypodium distachyon bdi-miR7709-5p mature miRNA
• Sequence: 15 - UAAAGUAUGACUAGGCACACG - 35
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7709-3p

• Accession: MIMAT0030136
• Description: Brachypodium distachyon bdi-miR7709-3p mature miRNA
• Sequence: 356 - UGUGCCUAGUCGUACUUUGAU - 376
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443