miRBase entry: bdi-MIR7711

Stem-loop bdi-MIR7711


Accession
MI0025322
Description
Brachypodium distachyon bdi-MIR7711 precursor miRNA


Sequence

ggauaauagaaacaUACUUAGCCUCUUUGACAAUCUUGAUGAUAGAAUUUCUAAAUUAGAAGCCAUAAGUGAAAUCAACUCAUUCUGAAUUUUAUGACCAAGAUAACgauaaugaaucucuuuguuuuaaaugucuaagauguuuuugcauuaccaagucaaauucugcaacuaucgcaacacaagcuaagaaguuacccuuaagguauugugaacuugcucacuggaucuucuaaaaggcauagcguaagggaugucuuauuacgaauaauugccauuuugaaauuucuuguugaacacaauuggcuuuuagaggagccaucgagcaacuuuacaaugaacuuaaugguaauuucuuagcuugugaugggaucauugcagaauuugauuugguaaugcaagaccaucuuaggcguauuaaaaaacagagagauucauuagcauUAUCCUAGCCAUAAAAUUCAGUAUGAGUCGAUUUCUCUUAUGGCUucuaacuugcaaauuuuaucaucaAGAUUGUUAAAGAGGCCAAGUAUUucuuuguuauc
.(((((((((...((((((.((((((((((((((((((((((((((((((.(((.((((((((((((((.((((((.((((((.((((((((((((.(...(((((.(.(((((((((((((((((((..((((((((((((.((((((((((((((((((((((((((((..(((.((.(((((((((((((((((((.(((((.(((((((((.((((((..(((.(((((((((((((((..(....)..))))))).............((((..(((....(((.....)))..))).))))..)))))))).)))..)))))).)))))))))..))))).))))))))))))))))))).)).)))..)))))))))))))))))))))))))))).)))))))))))).....))))))))))))))))))).).)))))...).)))))))))))).)))))).)))))).)))))))))))))).))).)))))))))))))))))))))))))))))).))))))...)))))))))

Structure
g         aac      A                              C   A              U      A      U            A CAA     C a                   ---aa            u                            cu   g  a                   c     -g         c      ac   a        aaggcauagcguaagggaugucuuauuacgaauaauu    uu   aaau   u 
 gauaauaga   aUACUU GCCUCUUUGACAAUCUUGAUGAUAGAAUUU UAA UUAGAAGCCAUAAG GAAAUC ACUCAU CUGAAUUUUAUG C   GAUAA g uaaugaaucucuuuguuuu     augucuaagaug uuuugcauuaccaagucaaauucugcaa  auc ca cacaagcuaagaaguuacc uuaag  uauugugaa uugcuc  ugg ucuucuaa                                     gcca  uug    uuc u
 |||||||||   |||||| |||||||||||||||||||||||||||||| ||| |||||||||||||| |||||| |||||| |||||||||||| |   ||||| | |||||||||||||||||||     |||||||||||| ||||||||||||||||||||||||||||  ||| || ||||||||||||||||||| |||||  ||||||||| ||||||  ||| ||||||||                                     ||||  |||    ||| g
 cuauuguuu   UAUGAA CGGAGAAAUUGUUAGAacuacuauuuuaaa guu aaucuUCGGUAUUC CUUUAG UGAGUA GACUUAAAAUAC G   CUAUu c auuacuuagagagacaaaa     ugcggauucuac agaacguaaugguuuaguuuaagacguu  uag gu guguucgauucuuuaaugg aauuc  guaacauuu aacgag  acc aggagauu                                     cggu  aac    aag u
-         cuU      C                              c   c              U      C      U            C AUC     a g                   aauua            c                            ac   g  a                   u     aa         c      cu   g        -----------------------------------uu    -u   --ac   u 


Annotation confidence Not enough data
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Genome context
3: 4809448-4809995 [-]

Database links

Mature bdi-miR7711-5p.1

Accession MIMAT0030139
Description Brachypodium distachyon bdi-miR7711-5p.1 mature miRNA
Sequence 15 - UACUUAGCCUCUUUGACAAUCUUG - 38
Evidence experimental
Illumina [1]

Mature bdi-miR7711-5p.2

Accession MIMAT0030140
Description Brachypodium distachyon bdi-miR7711-5p.2 mature miRNA
Sequence 39 - AUGAUAGAAUUUCUAAAUUAGAAG - 62
Evidence experimental
Illumina [1]

Mature bdi-miR7711-5p.3

Accession MIMAT0030141
Description Brachypodium distachyon bdi-miR7711-5p.3 mature miRNA
Sequence 63 - CCAUAAGUGAAAUCAACUCAUUCU - 86
Evidence experimental
Illumina [1]

Mature bdi-miR7711-5p.4

Accession MIMAT0030142
Description Brachypodium distachyon bdi-miR7711-5p.4 mature miRNA
Sequence 84 - UCUGAAUUUUAUGACCAAGAUAAC - 107
Evidence experimental
Illumina [1]

Mature bdi-miR7711-3p.4

Accession MIMAT0030143
Description Brachypodium distachyon bdi-miR7711-3p.4 mature miRNA
Sequence 445 - UAUCCUAGCCAUAAAAUUCAGUAU - 468
Evidence experimental
Illumina [1]

Mature bdi-miR7711-3p.3

Accession MIMAT0030144
Description Brachypodium distachyon bdi-miR7711-3p.3 mature miRNA
Sequence 466 - UAUGAGUCGAUUUCUCUUAUGGCU - 489
Evidence experimental
Illumina [1]

Mature bdi-miR7711-3p.1

Accession MIMAT0030145
Description Brachypodium distachyon bdi-miR7711-3p.1 mature miRNA
Sequence 514 - AGAUUGUUAAAGAGGCCAAGUAUU - 537
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443