miRBase entry: bdi-MIR7712

Stem-loop bdi-MIR7712


Accession
MI0025323
Description
Brachypodium distachyon bdi-MIR7712 precursor miRNA


Sequence

guacuacuuuuUAGAGCUCUGAAGUUACCACCCACaauaagugacuuaucgggcuauucacuauugguuuuagugcuagaccuaacuagccauauuuuggcuaaauacauuuugaucucagauauuaccaaccaacuacaauguaaauuacuagucuaaugacaaagaguuaccacauugaaaacugaucucacucaugaaguuccagugagaguuccaguaauagaguuaucguacuauccacaaguaguuaucagcuaguaaacugugaguuaucgggcucuauucauaaguagucaucaguuuuuaacacaaagucuuaucuaaacaccaugguaacuaaacaagugcuauggugguaacuauaaccuauauaacuagcaaacuacaucggugcuacgaugauaaauauaccaugaauagcuagguaacucucuuaagugccaucgugguaacuguaacucaaaaguuggguaacuaugugaugagaugugguauauauguacuuugaagagccagauaacuccaauaugUUAUUGUGGUAACUUUAAGAUGGCaaguagguaa
...((((((......((((((((((((((((.(((.....)))..((((..((((..(.((((((((...((((((..((((((..((((((.....)))))).......((((....))))................((((((.((((....(((....)))....))))...))))))...((((.(((((((...........)))))))....))))..))).)))...)))))).)))...))))).)..)))).))))..((.((((((((.((((((..(((.(((((...((((..(((((.((((.(((..(((((((.((((((((((.((.....))))))))))))..............................(((((......))))).......((((((((...((((((.......))).)))....))))))))...............)))))))))).)))).)))))..)))).......)))))))))))))).))))))))))..........))))))))))).)))..))))))))....

Structure
-gua      uuUAGA  --   -           --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C   a 
    cuacuu      GC  UCU GAAGUUACCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAC a
    ||||||      ||  ||| |||||||||||                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ||| u
    gaugaa      CG  AGA UUUCAAUGGUG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               gug a
aaug      ------  GU   A           UUAUUguauaaccucaauagaccgagaaguuucauguauauaugguguagaguaguguaucaauggguugaaaacucaaugucaauggugcuaccgugaauucucucaauggaucgauaaguaccauauaaauaguagcaucguggcuacaucaaacgaucaauauauccaauaucaauggugguaucgugaacaaaucaaugguaccacaaaucuauucugaaacacaauuuuugacuacugaugaauacuuaucucgggcuauugagugucaaaugaucgacuauugaugaacaccuaucaugcuauugagauaaugaccuugagagugaccuugaaguacucacucuagucaaaaguuacaccauugagaaacaguaaucugaucauuaaauguaacaucaaccaaccauuauagacucuaguuuuacauaaaucgguuuuauaccgaucaauccagaucgugauuuugguuaucacuuaucgggcuauuca   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
4: 33900876-33901442 [-]

Database links

Mature bdi-miR7712-5p

Accession MIMAT0030146
Description Brachypodium distachyon bdi-miR7712-5p mature miRNA
Sequence 12 - UAGAGCUCUGAAGUUACCACCCAC - 35
Evidence experimental
Illumina [1]

Mature bdi-miR7712-3p

Accession MIMAT0030147
Description Brachypodium distachyon bdi-miR7712-3p mature miRNA
Sequence 534 - UUAUUGUGGUAACUUUAAGAUGGC - 557
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443