Stem-loop bdi-MIR7713

Accession

MI0025324

Description

Brachypodium distachyon bdi-MIR7713 precursor miRNA

Sequence

uagcaaccgcgUAGGAAUUGAUGGAACAGCUCACAaugaggaggcgacaacauagaggaaaggugccgaugacagcgcagggugaaauggagagcgucgaggcgguggucccaaaacaugcagguaccaugcgcguaggacacuaggacuguccauguggaccaucaucacauuuguaguaauguuuuuuggccaauuuuauuucuuuaugagccaaauuaauaagauuuuuuuuugcaaguuggaugaaacucuccuuuugccuagaagaugaauuccgugauacuguugccagccaucUUGAGACUGGCAGCAUUAGCAAGCgcauauggau
........((((..(..((((((...(((((((..(((.(..(((((((..((...((((..((((........)))).((((((((.(((((((((....)))(((((((((..((.((((.......)))).)).(((((.......))))).)).)))))))((((..((((((((.((((((.((((((((..............)).))))))..)))).......)).))))))))..))))...))))))))))))))..........))))...))..)))))))..))))..)))).)))....)))))))..))))........

Structure

uagcaacc    AG AA      -GAA   -    CA   a ga       ac  aga    aggugccgaugacagcgca        u      cgucgaggcgguggucccaaaacaugcagguaccaugcgcguaggacacuaggacuguccauguggaccau    ac        u  -------    -u      -  auuuua 
        gcgU  G  UUGAUG    CAG CUCA  aug g  ggcgaca  au   ggaa                   gggugaaa ggagag                                                                       cauc  auuuguag aa       uguu  uuuggc ca      u
        ||||  |  ||||||    ||| ||||  ||| |  |||||||  ||   ||||                   |||||||| ||||||                                                                       ||||  |||||||| ||       ||||  |||||| ||       
        cgCG  C  GAUUAC    GUC GAGU  uac c  ccguugu  ua   ccuu                   uccguuuu ccucuc                                                                       guag  ugaacguu uu       auaa  aaaccg gu      u
uagguaua    AA --      GACG   A    Uc   - ga       ca  gug    ---------aaguagaaga        -      --------------------------------------------------------------------aaa    gu        u  uuuuaga    uu      a  auuucu 

Annotation confidence Not enough data

Genome context

1: 72881362-72881695 [-]

Mature bdi-miR7713-5p

• Accession: MIMAT0030148
• Description: Brachypodium distachyon bdi-miR7713-5p mature miRNA
• Sequence: 12 - UAGGAAUUGAUGGAACAGCUCACA - 35
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7713-3p

• Accession: MIMAT0030149
• Description: Brachypodium distachyon bdi-miR7713-3p mature miRNA
• Sequence: 301 - UUGAGACUGGCAGCAUUAGCAAGC - 324
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443