miRBase entry: bdi-MIR7716

Stem-loop bdi-MIR7716


Accession
MI0025327
Description
Brachypodium distachyon bdi-MIR7716 precursor miRNA


Sequence

gagacggauucgugUCAGUUGCUAGAGAAGAACGAAACgaccgucagcagaggaggaggugucaucggaggucuugaucaaacaaagagaaauaagguggcggccucaggagucaucucugcuugccacagaaauugcaggaagaggaggagaaaauggaggguucucuggagaagaugagaugaccucaucuucuuuggagaaccuuucaguuuuuucuccucuuccugcaacuuuucguuccaagcagaggcgacggccucgccaccuuguuucucuuuuuucacgaccuucgacgcuuccucugacgacgauggcggucguUUCGUUCUUCUCCAGUAAUUGACCugaauccauc
.....(((((((.((((((((((.((((((((((((((((((((((...(.((((((((((((...(((((((.(((......((((((((((((((((((((((......(((.((((((((((..((((((.(((((((((((((((((((((.(((((((((((((((((((((((((.....))))))))))))))))))))))))).))))))))))))))))))))).)))).))..)))))))))).)))))))..))))))))))))))))))..))).)))))))))))))))))))..).....)))))))))))))))))))))).)))))))))).)))))))...

Structure
gagac       u          A                      --gca -a            auc       u   ucaaac                  --    ucagga   a          cc  -    a                     a                         a 
     ggauucg gUCAGUUGCU GAGAAGAACGAAACgaccguca     g  ggaggagguguc   ggagguc uga      aaagagaaauaagguggc  ggcc      guc ucucugcuug  ac agaa uugcaggaagaggaggagaaa uggaggguucucuggagaagaugag u
     ||||||| |||||||||| ||||||||||||||||||||||     |  ||||||||||||   ||||||| |||      ||||||||||||||||||  ||||      ||| ||||||||||  || |||| ||||||||||||||||||||| ||||||||||||||||||||||||| g
     ccuaagu CAGUUAAUGA CUCUUCUUGCUUugcuggcggu     c  ucuccuucgcag   cuuccag acu      uuucucuuuguuccaccg  ccgg      cag ggagacgaac  ug uuuu aacguccuucuccucuuuuuu acuuuccaagagguuucuucuacuc a
--cua       C          C                      agcag ag            ---       c   ----uu                  cu    ------   c          cu  c    c                     g                         c 


Annotation confidence Not enough data
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Genome context
2: 7864984-7865341 [-]

Database links

Mature bdi-miR7716-5p

Accession MIMAT0030154
Description Brachypodium distachyon bdi-miR7716-5p mature miRNA
Sequence 15 - UCAGUUGCUAGAGAAGAACGAAAC - 38
Evidence experimental
Illumina [1]

Mature bdi-miR7716-3p

Accession MIMAT0030155
Description Brachypodium distachyon bdi-miR7716-3p mature miRNA
Sequence 325 - UUCGUUCUUCUCCAGUAAUUGACC - 348
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443