miRBase entry: bdi-MIR7723a

Stem-loop bdi-MIR7723a


Accession
MI0025336
Description
Brachypodium distachyon bdi-MIR7723a precursor miRNA
Gene family
MIPF0001739; MIR7723


Sequence

aaaguucaauuuUGAAACAACUAUCUUGGCCUUCUCuucugucugcuagaccaacacauugaucuccuauugguaaccccaacaauccuucaucuguauaugcaauuauacgauagcuaguuuuuugguuauuugccuauauaauugaaagaauguuggggcugccgaugaaaucagucuguagguccagccaucacacaaGAGGGCCAAGGUAGUUGUUUCACAguugcaccuu
...((.(((((.(((((((((((((((((((((((....((...(((.((((.(((.((((((.((..(((((((.((((((((.((.((((..((((((.(((.......(((((((((....)))))))))))).))))))..)))).)).)))))))).))))))))).)))))).))).)))).)))...))....))))))))))))))))))))))).))))).))...

Structure
aaa  u     u                       Cuuc  ucu   a    a   c      c  cu       a        a  c    uc      u   auuauac         u 
   gu caauu UGAAACAACUAUCUUGGCCUUCU    ug   gcu gacc aca auugau uc  auuggua ccccaaca uc uuca  uguaua gca       gauagcuag u
   || ||||| |||||||||||||||||||||||    ||   ||| |||| ||| |||||| ||  ||||||| |||||||| || ||||  |||||| |||       |||||||||  
   ca guugA ACUUUGUUGAUGGAACCGGGAGa    ac   cga cugg ugu ugacua ag  uagccgu gggguugu ag aagu  auauau cgu       uuauugguu u
uuc  c     C                       acac  uac   c    a   c      a  --       c        a  a    ua      c   -------         u 


Annotation confidence Not enough data
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Genome context
1: 55108461-55108695 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bdi-MIR7723a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR7723a-5p

Accession MIMAT0030172
Description Brachypodium distachyon bdi-miR7723a-5p mature miRNA
Sequence 13 - UGAAACAACUAUCUUGGCCUUCUC - 36
Evidence experimental
Illumina [1]

Mature bdi-miR7723a-3p

Accession MIMAT0030173
Description Brachypodium distachyon bdi-miR7723a-3p mature miRNA
Sequence 202 - GAGGGCCAAGGUAGUUGUUUCACA - 225
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443