Stem-loop bdi-MIR7731

Accession

MI0025347

Description

Brachypodium distachyon bdi-MIR7731 precursor miRNA

Sequence

cugcuuucccugaUUCCAAAUUCCUGAGCAAACAUAUgcacgcuuguugugaaaaacaauuucauggauucucugcgggagaaguugacagauuuucucuaaguauguugaucacuuguuuuucauucagcuucuuagaguaccuuugccucucuacaaucuugcauuccgcagugugcaacauuguacauuggcaaauguacucuaagaaguuuaaugacaaacaagggaugcacauacuuugagcaaccugucaucgucuccauaaaugaacagagcaucugugggaugguucuccacagcaaguaugaagaacauAGGUUUGCUCUGGACUUUGGAAUCaggaucaccag
(((.....((((((((((((.(((.((((((((.((((((.((((((((((...(((.(((((((((((.(((((..(((((.(.((((((.....(((.((((((((..(((.(((((((.(((((.(((((((((((((((.((((((....((((((.((((((........)))))).))))))....)))))).))))))))))))))).))))).))))))).)))..)))))))).)))....)))))).).))))).........))))).))))))))))).)))...)))))))))).)).....)))).)))))))).))).)))))))))))).....)))

Structure

   cuuuc            U   U        A    -----  c          aaa   a           u     -------cg     a u      auuuu   u        ug   a       u     c               c      ucuc      c      ucc 
cug     ccugaUUCCAAA UCC GAGCAAAC UAUg     ca gcuuguugug   aac auuucauggau cucug         ggaga g ugacag     cuc aaguaugu  auc cuuguuu ucauu agcuucuuagaguac uuugcc    uacaau uugcau   g
|||     |||||||||||| ||| |||||||| ||||     || ||||||||||   ||| ||||||||||| |||||         ||||| | ||||||     ||| ||||||||  ||| ||||||| ||||| ||||||||||||||| ||||||    |||||| ||||||    
gac     ggaCUAAGGUUU AGG CUCGUUUG Auac     gu ugaacgacac   uug uagggugucua gagac         ccucu c acuguc     gag uucauaca  uag gaacaaa aguaa uugaagaaucucaug aaacgg    auguua aacgug   c
   cacua            C   U        G    aagaa  a          cuc   g           c     aaguaaaua     g u      -caac   u        cg   g       c     u               u      uuac      c      uga 

Annotation confidence Not enough data

Genome context

4: 4382662-4383014 [+]

Mature bdi-miR7731-5p

• Accession: MIMAT0030196
• Description: Brachypodium distachyon bdi-miR7731-5p mature miRNA
• Sequence: 14 - UUCCAAAUUCCUGAGCAAACAUAU - 37
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7731-3p

• Accession: MIMAT0030197
• Description: Brachypodium distachyon bdi-miR7731-3p mature miRNA
• Sequence: 319 - AGGUUUGCUCUGGACUUUGGAAUC - 342
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443