miRBase entry: bdi-MIR7717c

Stem-loop bdi-MIR7717c


Accession
MI0025351
Description
Brachypodium distachyon bdi-MIR7717c precursor miRNA
Gene family
MIPF0001715; MIR7717


Sequence

uuuggcgguuUUGCUAUUUCUUGGGCGACUGAGAaauaacuauuucuuagucaaugauuacaaccuuuugauucaaucaucgagauuguaggucugauggauaagaaagauuuucauuggaugacuacgauugucgaucgagaaauaacuauuucUUAGUUGACUGAGAAAUAGACGGUcccaauuuuug
.((((.((..((((((((((((((.(((((((((((((..((((((((((((((.............)))))).....(((((((((((((((((((((((...........))))))))))..)))))))).))))).))))))))..))))))))))))).))))))))))).)))))))))......

Structure
-----u    c  uu   -           G             ac        agucaaugauuacaaccuuuugauucaauc     -        --          uaag 
      uugg gg  UUG CUAUUUCUUGG CGACUGAGAaaua  uauuucuu                              aucga gauuguag  gucugaugga    a
      |||| ||  ||| ||||||||||| |||||||||||||  ||||||||                              ||||| ||||||||  ||||||||||    a
      aacc cU  GGC GAUAAAGAGUC GUUGAUUcuuuau  auaaagag                              uagcu uuagcauc  uagguuacuu    a
guuuuu    -  --   A           A             ca        -----------------------------c     g        ag          uuag 


Annotation confidence Not enough data
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Genome context
3: 32702277-32702466 [+]

Database links

Mature bdi-miR7717c-5p

Accession MIMAT0030204
Description Brachypodium distachyon bdi-miR7717c-5p mature miRNA
Sequence 11 - UUGCUAUUUCUUGGGCGACUGAGA - 34
Evidence experimental
Illumina [1]

Mature bdi-miR7717c-3p

Accession MIMAT0030205
Description Brachypodium distachyon bdi-miR7717c-3p mature miRNA
Sequence 156 - UUAGUUGACUGAGAAAUAGACGGU - 179
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443