Stem-loop bdi-MIR7737

Accession

MI0025354

Description

Brachypodium distachyon bdi-MIR7737 precursor miRNA

Literature search

0 open access papers mention bdi-MIR7737
(0 sentences)

Sequence

cgcggaacgauccauUUUCGGUCAAUGUAUUUCAAGCAGuccaaaucacugauuuaagucuguuugacaugauucuuuacaaguggaucccacccgugaggugccaggccgaccuguuagccugcuuugcccacaucuauccccccucucccuugguggggucagguuuaagccgacguggcaucgacaacgugaggcccaucugucaggaauuuuauuaaacaggcuuaauccaguauuuugguacuACUUGAGACGGACUGUAUUAAAAAugagugguuccgcgaaca
((((((((.((.(((((((((((......(((((((.((((((((..((((..((((((((((((((...(((((((.(((.((((..(((((......(((((((.(.((..((...((((((....((((.((((.................))))))))))))))..)).)).).)))))))......))).)).)))).))).)))))))...))))))))))))))..))))..))))).))).)))))))..))))).....)))))).)).))))))))....

Structure

----        g  c      -----     AAUGUA       C   -     uc    au              cau       u   a    au  -   ccguga       g c  ac  guu      cuuu    a    uaucccc 
    cgcggaac au cauUUU     CGGUC      UUUCAAG AGu ccaaa  acug  uuaagucuguuuga   gauucuu aca gugg  cc cac      ggugcca g cg  cu   agccug    gccc cauc       c
    |||||||| || ||||||     |||||      ||||||| ||| |||||  ||||  ||||||||||||||   ||||||| ||| ||||  || |||      ||||||| | ||  ||   ||||||    |||| ||||       c
    gcgccuug ug guAAAA     GUCAG      AGAGUUC uca gguuu  ugac  aauucggacaaauu   uuaagga ugu uacc  gg gug      cuacggu c gc  ga   uuggac    uggg gugg       u
acaa        g  a      AUUAU     ----GC       A   u     ua    cu              auu       c   c    -c  a   caacag       g a  -c  -au      ----    -    uucccuc 

Annotation confidence Not enough data

Genome context

3: 58512458-58512747 [-]

Mature bdi-miR7737-5p

• Accession: MIMAT0030210
• Description: Brachypodium distachyon bdi-miR7737-5p mature miRNA
• Sequence: 16 - UUUCGGUCAAUGUAUUUCAAGCAG - 39
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7737-3p

• Accession: MIMAT0030211
• Description: Brachypodium distachyon bdi-miR7737-3p mature miRNA
• Sequence: 249 - ACUUGAGACGGACUGUAUUAAAAA - 272
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443