Stem-loop sequence bdi-MIR7747

Accession

MI0025365 (change log)

Description

Brachypodium distachyon miR7747 stem-loop

Stem-loop

   auuaucac        a                   uga        uc          u   a    g    c          a    uuau  c     c       a           ugcguacuguaguuuacucuagaucguguguaucgcagauuuucaugu 
5'         gggaucag uuguuuuguuguaggauga   aguguugu  gccgaucgga ugu uguu uguu uuggacuaug uagu    gu gaaug acuuuug uuuucagauug                                                u
           |||||||| |||||||||||||||||||   ||||||||  |||||||||| ||| |||| |||| |||||||||| ||||    || ||||| ||||||| |||||||||||                                                 
3'         cucuaguc aacaaaacaauauccuacu   ucacagca  cggcuagucu aua acaa acaa agcuugauac guca    ca cuuac ugaaaac aaaagucuaac                                                c
   uaaucauu        a                   ---        ga          u   c    a    c          c    ----  a     a       a           acacaugaugucuaaaagcauaagagagaaaaucuuugagaacuucuc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 1: 53276108-53276440 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025365

Mature sequence bdi-miR7747-5p

• Accession: MIMAT0030234
• Sequence: 12 - aucagauuguuuuguuguaggaug - 35
• Evidence: experimental; Illumina [1]

Mature sequence bdi-miR7747-3p

• Accession: MIMAT0030235
• Sequence: 300 - auccuauaacaaaacaaacugauc - 323
• Evidence: experimental; Illumina [1]

References

1. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).