Stem-loop sequence bdi-MIR7750

Accession

MI0025368 (change log)

Description

Brachypodium distachyon miR7750 stem-loop

Stem-loop

   -ga   ---aa   a    a                   ca            u  a  c           --------a    u   ua               c     a       uauu      gu         ug    a   -a     uaaa    uuccuaaaa         a     c            c   -----au     ----u        ac 
5'    gga     cuc ucug aucauugccgaccaugcaa  uaguacuauccu gg ga uaauguuauga         agau guu  caugaugccauuuga uugaa cuugaau    gcagua  uacucauuu  guuu ucu  aaaag    guga         cugcugcga uauug uagugaugcaag aac       ggggu     auugcauu  a
      |||     ||| |||| |||||||||||||||||||  |||||||||||| || || |||||||||||         |||| |||  ||||||||||||||| ||||| |||||||    ||||||  |||||||||  |||| |||  |||||    ||||         ||||||||| ||||| |||||||||||| |||       |||||     ||||||||  g
3'    ccu     gag agac uaguaacggcugguacguu  aucaugauagga cc cu auuacaaugcu         uuua caa  guacuacgguaaacu aacuu gaacuua    uguuau  augagugaa  caaa aga  uuuuc    cacu         gacgaugcu guaac aucacuacguuc uug       uccca     uaacguag  u
   auc   gguca   c    a                   ac            -  a  a           guuuuacug    c   gc               c     c       ----      ug         ua    -   aa     ----    -------uc         a     a            u   auccuuu     uaacu        aa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 4: 5126959-5127388 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bdi-MIR7750

• bdi-MIR7764: 4: 5125732-5125842 [+]
• bdi-MIR7750: 4: 5126959-5127388 [+]

Database links

• miRBase Tracker:MI0025368

Mature sequence bdi-miR7750-5p

• Accession: MIMAT0030240
• Sequence: 11 - aucugaaucauugccgaccaugca - 34
• Evidence: experimental; Illumina [1]

Mature sequence bdi-miR7750-3p

• Accession: MIMAT0030241
• Sequence: 395 - cauggucggcaaugauacagacga - 418
• Evidence: experimental; Illumina [1]

References

1. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).