Stem-loop sequence bdi-MIR7757

Accession

MI0025377 (change log)

Description

Brachypodium distachyon miR7757 stem-loop

Gene family

MIPF0002033; MIR7757

Stem-loop

   -----------------------------------------------                    aa         a  a          a     aa     c            g       c       c               c        a c       u         u          a     c  u          ---------             a    cuagcuagaacaacaucauauuaagucuuuagucucaaguaaguccggguaggcuagagaugaaauccaauaggagcuuaacguuguuu 
5'                                                uggaucaugcuucuauuuau  gcucauuga gu acucucuccg gcuca  uaggc aauuuuuuguuu ugugaua acaaaac uucagcuacccacuu cauaucaa u aucucuc ugguuuucu gucuuuugga auaua uu gauaugauaa         aagaugagaaggu gauc                                                                                         c
                                                  ||||||||||||||||||||  ||||||||| || |||||||||| |||||  ||||| |||||||||||| ||||||| ||||||| ||||||||||||||| |||||||| | ||||||| ||||||||| |||||||||| ||||| || ||||||||||         ||||||||||||| ||||                                                                                         a
3'                                                acuuaguacgaagauaaaua  cgaguaacu ca ugagagaggc cgagu  auccg uuaaagaacaaa guacuau uguuuug aaguugaugggugaa guauaguu a uagagag auuagaaga uagaagacuu uguau aa uuauacuauu         uucuacucuucca cuag                                                                                         g
   uuauuauguaaaggaacggaagugucagcaguagccacagauaacca                    ca         -  a          c     gc     a            a       u       u               u        c a       u         u          a     c  u          gauugugau             c    uuuugauaaucauuuucucugaacugaauaucuaguaccaaaccguauuagauguucauucguagaaaaugauuguucaacaugugaug 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Bd21; GCA_000005505.1): 2: 57745334-57745931 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025377

Mature sequence bdi-miR7757-5p.1

• Accession: MIMAT0030258
• Sequence: 80 - cacaaaaccuucagcuaccca - 100
• Evidence: experimental; Illumina [1]

Mature sequence bdi-miR7757-5p.2

• Accession: MIMAT0030259
• Sequence: 101 - cuuccauaucaaaucaucucu - 121
• Evidence: experimental; Illumina [1]

Mature sequence bdi-miR7757-3p.2

• Accession: MIMAT0030260
• Sequence: 434 - agauaacuugauauguaagug - 454
• Evidence: experimental; Illumina [1]

Mature sequence bdi-miR7757-3p.1

• Accession: MIMAT0030261
• Sequence: 455 - gguaguugaauguuuuguuua - 475
• Evidence: experimental; Illumina [1]

References

1. PMID:23264558 "Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon" Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E Mol Plant. 6:423-443(2013).