Stem-loop bdi-MIR7708b

Accession

MI0025385

Description

Brachypodium distachyon bdi-MIR7708b precursor miRNA

Sequence

34412 reads, 240.0 reads per million, 21 experiments

uugcccaggaccauuACAAUUCUUGGGACAUUUGCUGAAacacaccgcccguccaaaaagggaaaguugaccuuuuugucugcucaugacauguuuuuuagcuugagauggcuguuuugaauaguuuuuuucucuaaugaaaauuuucccugcucaugagucgaacaaaauaauuacugcguuccucgaccuuauauaugggaugacgggugaccuuuugggauacugacccaagugcuacuuuucuuuuuuguuguucacuuuugagaaucuggagcaagcugaucgcuuucggauugaguauaggcacggaaaaguacugcuugauuugauaugguccaaagaggcgacauccucaaggaaaaguaaagguguauucauuaaauaaaugaagaaacucucccuuuuuguacgggcaguguguuucggcaaauggcccgagaAUUGUAAUGGUACUGGGCAAA
((((((((.((((((((((((((((((.(((((((((((((((((.((((((.((((((((((.((((.(((((((((((.((((((((((...((((((....((((.(((((((...)))))))....))))...)))))).......)).)))))))).).))))))...(((((...(((((...((........))..(((.(((((.((((((.((((.......((((((.(((((((((....((((..(.((((.....((((((((...(((.....))))))))))))))))..)))).))))))))).))))))..........)))).))))))...))))))))))))).)))))))))...((((((.....))))))..)))).)))))))))).)))))).))))))))))))))))).)))))))))))))))))).)))))))).

Structure

-        g                  A                 c      c          a    ---------------------g    uuuugucugcucaugacauguuuuuuagcuugagauggcuguuuugaauaguuuuuuucucuaaugaaaauuuucccugcucaugagucgaacaaaauaa     gcg     cgaccuuauauauggga   c     --a      g    ---acugacc      c         uuuu    gu c    uugag        gca   u 
 uugcccag accauuACAAUUCUUGGG CAUUUGCUGAAacacac gcccgu caaaaaggga aguu                      accu                                                                                                    uuacu   uuccu                 uga gggug   ccuuuu ggau          caagug uacuuuucu    uguu  u acuu     aaucugga   agc g
 |||||||| |||||||||||||||||| ||||||||||||||||| |||||| |||||||||| ||||                      ||||                                                                                                    |||||   |||||                 ||| |||||   |||||| ||||          |||||| |||||||||    ||||  | ||||     ||||||||   ||| a
 AACGGGUC UGGUAAUGUUAagagccc guaaacggcuuugugug cgggca guuuuucccu ucaa                      ugga                                                                                                    aauga   aagga                 acu ccuac   ggagaa ccug          guucgu augaaaagg    acgg  a ugag     uuaggcuu   ucg u
A        A                  g                 a      u          c    agaaguaaauaaauuacuuaug    ----------------------------------------------------------------------------------------------------     --a     -----------------   -     agc      a    guauaguuua      c         ---c    au -    -----        ---   c 

Annotation confidence Low

Genome context

1: 49383462-49383925 [-]

Mature bdi-miR7708b-5p

• Accession: MIMAT0030276
• Description: Brachypodium distachyon bdi-miR7708b-5p mature miRNA
• Sequence: 16 - ACAAUUCUUGGGACAUUUGCUGAA - 39
• Evidence: experimental ; Illumina [1]

Mature bdi-miR7708b-3p

• Accession: MIMAT0030277
• Description: Brachypodium distachyon bdi-miR7708b-3p mature miRNA
• Sequence: 444 - AUUGUAAUGGUACUGGGCAAA - 464
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443