miRBase entry: bdi-MIR7779

Stem-loop bdi-MIR7779


Accession
MI0025401
Description
Brachypodium distachyon bdi-MIR7779 precursor miRNA


Sequence

gggcagcgacGAGGUCAUUGUCAGACAUGGGAAGucccacgucagcccucggccagaucaucggagaccuccuuaaucuuggugcaauggucaaugauggagcccuugcacgaugcgaugaaguuugugcaacgucuccacgauggccuaggccauaggaauggucgccuuuugguccaugaucaugccgaagacggaggaggaaacuguggaguggauucacgaacaaaucgaugauccgccaauuguuguccuugaggucaaugugguuccugaugucauacUUCUCGAUCUGUAGACCGAUCUAGuagcgcuagug
.(((.((.((.(((((.((..((((..((((((((...(((((((.((.((((..((((((((....(((((((..((((.(.(((.(((((.....(((((.(.((((((((.((......)))))))))).).)))))..(((((....)))))....((((..(((....)))))))))))))))).))))..)))))))....((((((.....)))))).......)))))))).)))....((((.((....)).))))).))...)))))))...)))))))).))))..))..))))).)).)))))....

Structure
---g   a  g  G     -A  GU    CA        ccc       --c  u ----------------------   ca        ------------------------gaga       aa    g u   a     -----------------------------------aauga     c c        u  ga 
    ggc gc ac AGGUC  UU  CAGA  UGGGAAGu   acgucag   cc c                      ggc  gaucaucg                            ccuccuu  ucuu g gca ugguc                                        uggag c uugcacga gc  u
    ||| || || |||||  ||  ||||  ||||||||   |||||||   || |                      |||  ||||||||                            |||||||  |||| | ||| |||||                                        ||||| | |||||||| ||   
    ucg cg uG UCUAG  AG  GUCU  GCUCUUca   uguaguc   gg g                      ccg  cuaguagc                            ggaggag  agaa c cgu acuag                                        accuc g aacguguu ug  g
guga   -  a  A     CC  AU    -A        uac       cuu  u uaacuggaguuccuguuguuaa   -c        uaaacaagcacuuaggugaggugucaaa       gc    g -   -     uaccugguuuuccgcugguaaggauaccggauccgguagc     u c        -  aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
1: 38848227-38848545 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bdi-MIR7779
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdi-miR7779-5p

Accession MIMAT0030312
Description Brachypodium distachyon bdi-miR7779-5p mature miRNA
Sequence 11 - GAGGUCAUUGUCAGACAUGGGAAG - 34
Evidence experimental
Illumina [1]

Mature bdi-miR7779-3p

Accession MIMAT0030313
Description Brachypodium distachyon bdi-miR7779-3p mature miRNA
Sequence 285 - UUCUCGAUCUGUAGACCGAUCUAG - 308
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443