miRBase entry: hhi-mir-1788

Stem-loop hhi-mir-1788


Accession
MI0025430
Description
Hippoglossus hippoglossus hhi-mir-1788 precursor miRNA
Gene family
MIPF0000792; mir-1788


Sequence

ggauauacagucuuguuuucgaGGCUUGUUUUAAGUUGCCUGCGacuuguacacggacucaggcagcuaaagcaagucugggacgccacagacacaccuaca
.........((((.((.(((.((((((((((((.((((((((.(.((.......)).).)))))))))))))))))))).))).))...)))).........

Structure
ggauauaca    --u  u   g            A        C a  ug 
         gucu   gu uuc aGGCUUGUUUUA GUUGCCUG G cu  u
         ||||   || ||| |||||||||||| |||||||| | ||  a
         caga   cg agg ucugaacgaaau cgacggac c gg  c
acauccaca    cac  c   g            -        u a  ca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hhi-miR-1788

Accession MIMAT0030352
Description Hippoglossus hippoglossus hhi-miR-1788 mature miRNA
Sequence 23 - GGCUUGUUUUAAGUUGCCUGCG - 44
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 23626677
    Characterization of novel precursor miRNAs using next generation sequencing and prediction of miRNA targets in Atlantic halibut
    Bizuayehu TT, Fernandes JM, Johansen SD, Babiak I
    PLoS One (2013) 8:e61378