Stem-loop hhi-mir-196

Accession

MI0025435

Description

Hippoglossus hippoglossus hhi-mir-196 precursor miRNA

Gene family

MIPF0000031; mir-196

Literature search

2 open access papers mention hhi-mir-196
(7 sentences)

Sequence

gcggacuguugagugguuUAGGUAGUCUCAUGUUGUUGGGcuaaauuauuucucccacaacacgaaacugccuugauuaccucagua
....((((..(.((((((.(((((((.((.((((((.(((..(((...)))..))))))))).)).))))))).))))))).)))).

Structure

gcgg    uu a      U       C  A      U   cu   u 
    acug  g gugguu AGGUAGU UC UGUUGU GGG  aaa  
    ||||  | |||||| ||||||| || |||||| |||  ||| u
    ugac  c cauuag uccguca ag acaaca ccc  uuu  
---a    -u -      u       a  c      -   uc   a 

Annotation confidence Not enough data

Genome context

Unknown

Mature hhi-miR-196

• Accession: MIMAT0030357
• Description: Hippoglossus hippoglossus hhi-miR-196 mature miRNA
• Sequence: 19 - UAGGUAGUCUCAUGUUGUUGGG - 40
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 23626677
   Characterization of novel precursor miRNAs using next generation sequencing and prediction of miRNA targets in Atlantic halibut
   Bizuayehu TT, Fernandes JM, Johansen SD, Babiak I
   PLoS One (2013) 8:e61378