Stem-loop ptc-MIR7814

Accession

MI0025472

Description

Populus trichocarpa ptc-MIR7814 precursor miRNA

Sequence

uuuuucaauuUAGAUUGUUUUUAUGCUUUGAauuuaucuguuuucuuggguugugauuuguuaguguuugaucuuugcauguuccugcuucuggguuaugcuguuuucuaauguguuguagaggcuguagaucaaacucccaaacacaaacaaaucacaauccaagaaagcggauaaauucaaagcauaaaaacaaucuaaacugaaaaau
(((((((.((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((((......(((((.(((.......))).))))).((((((((..((.((...)).))..))))..))))...))))))).)))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))).

Structure

-       a                                                      a       aucuuugcauguuccugcuucuggguuaugcu    --    au  g  g 
 uuuuuca uuUAGAUUGUUUUUAUGCUUUGAauuuaucuguuuucuuggguugugauuuguu guguuug                                guuu  ucua  gu uu  
 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||                                ||||  ||||  || || u
 aaaaagu aaaucuaacaaaaauacgaaacuuaaauaggcgaaagaaccuaacacuaaacaa cacaaac                                caaa  agau  cg ag  
u       c                                                      a       -----------------------------ccu    cu    gu  g  a 

Annotation confidence Not enough data

Genome context

CM000352.2: 10809578-10809788 [+]

Mature ptc-miR7814

• Accession: MIMAT0030372
• Description: Populus trichocarpa ptc-miR7814 mature miRNA
• Sequence: 11 - UAGAUUGUUUUUAUGCUUUGA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233