miRBase entry: ptc-MIR7817b

Stem-loop ptc-MIR7817b


Accession
MI0025479
Description
Populus trichocarpa ptc-MIR7817b precursor miRNA


Sequence

auuuggugacugucucgggacagaaaagacaaaggcgguaggaaagagcgacacgucucuuuaucucuuguuuuggaaguauaaauucacuccaaaacuauuggauauuuauuucuaugucuccgucuuucuaaccaaacauguuucuauucccacaaucuuugUCUCUUCUGUUCCUGAACGGUaaccgaac
.((((((.(((((.(((((((((((.(((((((((.(((.(((((((..((.((((.....(((((...((((((((.((........))))))))))....))))).........)))).))..))))))).))).....(((..........))).))))))))).))))).))))))))))).)))))).

Structure
a      g     c      -     a         ---------------------c   a       gc  c    ----cucuu     -cuu        a  aua 
 uuuggu acugu ucggga cagaa agacaaagg                      ggu ggaaaga  ga acgu         uaucu    guuuugga gu   a
 |||||| ||||| |||||| ||||| |||||||||                      ||| |||||||  || ||||         |||||    |||||||| ||    
 aagcca UGGCA AGUCCU GUCUU UCUguuucu                      cca ucuuucu  cu ugua         auagg    caaaaccu ca   a
c      a     -      U     C         aacacccuuaucuuuguacaaa   a       gc  c    ucuuuauuu     uuau        -  cuu 


Annotation confidence Not enough data
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Genome context
CM000337.2: 15618173-15618365 [+]

Database links

Mature ptc-miR7817b

Accession MIMAT0030379
Description Populus trichocarpa ptc-miR7817b mature miRNA
Sequence 165 - UCUCUUCUGUUCCUGAACGGU - 185
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233