Stem-loop ptc-MIR1444e

Accession

MI0025486

Description

Populus trichocarpa ptc-MIR1444e precursor miRNA

Gene family

MIPF0000461; MIR1444

Literature search

3 open access papers mention ptc-MIR1444e
(71 sentences)

Sequence

guuuaucacuCGAACGUUGACCGAAUGUGAAugaaacauuuaaccaucauauuucauacauauucgaucaauauucgagggauaaaaa
.((((((.((((((.(((((.((((((((.((((((...............)))))).)))))))).))))).)))))).))))))..

Structure

-g      a      C     C        A      cauuua 
  uuuauc cuCGAA GUUGA CGAAUGUG Augaaa      a
  |||||| |||||| ||||| |||||||| ||||||      c
  aaauag gagcuu uaacu gcuuauac uacuuu      c
aa      g      a     a        a      auacua 

Annotation confidence Not enough data

Genome context

Unknown

Mature ptc-miR1444e

• Accession: MIMAT0030386
• Description: Populus trichocarpa ptc-miR1444e mature miRNA
• Sequence: 11 - CGAACGUUGACCGAAUGUGAA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233