miRBase entry: ptc-MIR7831

Stem-loop ptc-MIR7831


Accession
MI0025490
Description
Populus trichocarpa ptc-MIR7831 precursor miRNA


Sequence

gggaagaauacccaguuaguUACAUGUAGAGACCACCAAACccaaaguuucaguucacuuucugacagaacgaacccuaacucaaccuuuucucacucgagcagucacagggacaaaccaucuucaaaaacccuugggcuucgauuggagugguaaaagugagauaggacucucuuagaaggugaaguuuggguuugguggccacuacauguaauugguauucuuccucgcugcc
((((((((((((.....((((((((((((.(.((((((((((((((.(......(((((((((((.(((......((((.((((..(((((.((((((.(((((((.(((((...................)))))))))..).)).)))))).))))))))).))))..))).)))))))))))).)))))))))))))).).)))))))))))))))))))))))).......

Structure
-------            caguu            A A              g uucagu           c   acgaac    a    ac     c      g  - --    a     acaaacca 
       gggaagaauacc     aguUACAUGUAG G CCACCAAACccaaa u      ucacuuucuga aga      ccua cuca  cuuuu ucacuc ag c  aguc caggg        u
       ||||||||||||     |||||||||||| | |||||||||||||| |      ||||||||||| |||      |||| ||||  ||||| |||||| || |  |||| |||||        c
       uccuucuuaugg     uuaauguacauc c ggugguuuggguuu a      aguggaagauu ucu      ggau gagu  gaaaa ggugag uu g  ucgg guucc        u
ccgucgc            -----            a c              g ------           c   ----ca    a    --     u      g  a cu    -     caaaaacu 


Annotation confidence Not enough data
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Genome context
CM000346.2: 2022789-2023023 [+]

Database links

Mature ptc-miR7831

Accession MIMAT0030390
Description Populus trichocarpa ptc-miR7831 mature miRNA
Sequence 21 - UACAUGUAGAGACCACCAAAC - 41
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233