miRBase entry: ptc-MIR7838

Stem-loop ptc-MIR7838


Accession
MI0025494
Description
Populus trichocarpa ptc-MIR7838 precursor miRNA


Sequence

auaugaggaauuccuccuacccaacacguggcaaucucuuggacugucauuuguuggacaacauuuguuauuuuagaaauauauuugauaucaaaaucauacauguauaauaaaaaggguaaguuucuguuuaccaaaaagauuauggcaaaacaaaugguuuuuguugacaaaaaauaaaaagcaauuaaugcuacccaugcaugguggguugagagacugACAUGUGCUGGGUAGGAGGAAuuccuacuac
.....((((((((((((((((((.((((((.((.((((((....((((........)))).((((((((................((((......))))....((((((((......((((((......))))))......))))).))).))))))))..(((((((.......)))))))((((.....))))((((((.....)))))).)))))).)).)))))).)))))))))))))))))).....

Structure
auaug                  a      g  a      ---------------------------------ggacugucauuuguuggacaa        auuuuagaaauauauuugauaucaaaaucauaca   -     aaaaag      uu 
     aggaauuccuccuaccca cacgug ca ucucuu                                                      cauuuguu                                  ugu auaau      gguaag  u
     |||||||||||||||||| |||||| || ||||||                                                      ||||||||                                  ||| |||||      ||||||   
     uccuuAAGGAGGAUGGGU GUGUAC gu agagag                                                      guaaacaa                                  acg uauua      ccauuu  c
cauca                  C      A  c      uugggugguacguacccaucguaauuaacgaaaaauaaaaaacaguuguuuuug        ---------------------------------a   g     gaaaaa      gu 


Annotation confidence Not enough data
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Genome context
CM000342.2: 9390506-9390758 [-]

Database links

Mature ptc-miR7838

Accession MIMAT0030394
Description Populus trichocarpa ptc-miR7838 mature miRNA
Sequence 223 - ACAUGUGCUGGGUAGGAGGAA - 243
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233