Stem-loop ptc-MIR7839

Accession

MI0025495

Description

Populus trichocarpa ptc-MIR7839 precursor miRNA

Sequence

aauaaguaaaacaauaugugugauuccuuccaauuccauuugcuuaguuuauuuucaucgucccuuaaagaaauuaagaacaAGUGGCAUUGGAGGUAUCCCauguaauguuuuuuacugug
....(((((((((.((((((.(((..((((((((.(((((((((((((((.(((............))).))))))))..))))))).)))))))).))).)))))).)))..))))))...

Structure

aaua      --   a      u   uc        u       --        a   ucauc 
    aguaaa  aca uaugug gau  cuuccaau ccauuug  cuuaguuu uuu     g
    ||||||  ||| |||||| |||  |||||||| |||||||  |||||||| |||      
    ucauuu  ugu auguaC CUA  GGAGGUUA GGUGAac  gaauuaaa aaa     u
-gug      uu   a      C   -U        C       aa        g   uuccc 

Annotation confidence Not enough data

Genome context

CM000337.2: 22901250-22901371 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR7839

Mature ptc-miR7839

• Accession: MIMAT0030395
• Description: Populus trichocarpa ptc-miR7839 mature miRNA
• Sequence: 83 - AGUGGCAUUGGAGGUAUCCC - 102
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233