miRBase entry: ptc-MIR7840

Stem-loop ptc-MIR7840


Accession
MI0025497
Description
Populus trichocarpa ptc-MIR7840 precursor miRNA


Sequence

uuauagugcuCAAGGAGUAAUUAGUGACAUCuuauuaauuacauccuaagcucaucuugaagaaagagacagacacacaaaggaaagagaaaaugaaacucauggcccaucaaaagcgauuagaauaacccuaccuaagauaucucucuuguacuuguaucuauuuuuuuuuaaaguggaucaaaggacuagcuaauaagaugucacuaguuacuucuucaacaccauaaa
((((.(((...((((((((((((((((((((((((((.(((..((((....((((.(((((((((((...(((.(((...((..((((((..((((...)))).((.........))..((((...........))))......))))))...))))).))).))))))))))).)))).....)))).))).))))))))))))))))))))))))))...))).)))).

Structure
-    a   cuC                          a   ca    -aagc    c           gac   c   caa  -ga      ---------------------------------------aa    a 
 uuau gug   AAGGAGUAAUUAGUGACAUCuuauua uua  uccu     ucau uugaagaaaga   aga aca   ag   aagaga                                         auga  
 |||| |||   |||||||||||||||||||||||||| |||  ||||     |||| |||||||||||   ||| |||   ||   ||||||                                         |||| a
 aaua cac   uucuucauugaucacuguagaauaau gau  agga     ggug aauuuuuuuuu   ucu ugu   uc   uucucu                                         uacu  
a    c   aac                          c   -c    aacua    a           --a   a   ---  aug      cuauagaauccaucccaauaagauuagcgaaaacuacccgg    c 


Annotation confidence Not enough data
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Genome context
CM000345.2: 7737213-7737443 [+]

Database links

Mature ptc-miR7840

Accession MIMAT0030397
Description Populus trichocarpa ptc-miR7840 mature miRNA
Sequence 11 - CAAGGAGUAAUUAGUGACAUC - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23570526
    Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
    Shuai P, Liang D, Zhang Z, Yin W, Xia X
    BMC Genomics (2013) 14:233