Stem-loop ptc-MIR7829

Accession

MI0025504

Description

Populus trichocarpa ptc-MIR7829 precursor miRNA

Sequence

cccccauaagugugggcuuggaguuucuguguggccgugccauuggcggcaucaaucgaacaacuuuauccuccacaagcuguccccagcuccuuuaccucugguaauuugcuggacacucagccugucagccACACAGAAACUCCAAGCCCACaguuaugggg
.((((((((.(((((((((((((((((((((((((.(((((......)))))......................(((.((((...(((((....(((((...)))))...))))).....)))).)))..))))))))))))))))))))))))).))))))))

Structure

c        g                         cgugccauuggcggcaucaaucgaacaacuuuauccucc   a    --ucc     uccu     u 
 ccccauaa ugugggcuuggaguuucuguguggc                                       aca gcug     ccagc    uuacc  
 |||||||| |||||||||||||||||||||||||                                       ||| ||||     |||||    ||||| c
 gggguauu aCACCCGAACCUCAAAGACACAccg                                       ugu cgac     ggucg    aaugg  
-        g                         -------------------------------------ac   c    ucaca     -uuu     u 

Annotation confidence Not enough data

Genome context

CM000351.2: 14059579-14059742 [-]

Mature ptc-miR7829

• Accession: MIMAT0030404
• Description: Populus trichocarpa ptc-miR7829 mature miRNA
• Sequence: 134 - ACACAGAAACUCCAAGCCCAC - 154
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233