Stem-loop sequence rno-mir-155

Accession

MI0025509 (change log)

Description

Rattus norvegicus miR-155 stem-loop

Gene family

MIPF0000157; mir-155

Literature search

81 open access papers mention rno-mir-155
(444 sentences)

Stem-loop

                 ugu a        uu gcc 
5' cuguuaaugcuaau   g uagggguu  g   u
   ||||||||||||||   | ||||||||  |    
3' gacaauuacgauug   c auccucag  c   c
                 --u c        -u agu 

Deep sequencing

20070 reads, 0.833 reads per million, 480 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr11: 24176603-24176667 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0025509

Mature sequence rno-miR-155-5p

• Accession: MIMAT0030409
• Sequence: 4 - uuaaugcuaauugugauaggggu - 26
• Deep sequencing: 19977 reads, 480 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetScanVert:rno-miR-155-5p
  • miRDB:rno-miR-155-5p

Mature sequence rno-miR-155-3p

• Accession: MIMAT0030410
• Sequence: 43 - cuccuaccuguuagcauuaac - 63
• Deep sequencing: 90 reads, 66 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetScanVert:rno-miR-155-3p
  • miRDB:rno-miR-155-3p

References

1. PMID:23329697 "Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters" Uva P, Da Sacco L, Del Corno M, Baldassarre A, Sestili P, Orsini M, Palma A, Gessani S, Masotti A RNA. 19:365-379(2013).