Stem-loop ssp-MIR166

Accession

MI0025546

Description

Saccharum sp. ssp-MIR166 precursor miRNA

Gene family

MIPF0000004; MIR166

Sequence

agcuauuugcuucugaguggaauguugucugguucaaggucucgcuugcgauuuaaggaugauucgugcauggcauguguaguuuuuauuccuugaaucugugggaucUCGGACCAGGCUUCAUUCCCCucagcaauagc
.((((((.(((...(((.((((((..(((((((((.(((((((((....(((((((((((((....(((((.....)))))....))).)))))))))).))))))))).)))))))))..)))))).))))))))))))

Structure

a      u   ucu   u      uu         a         uugc          -   uucg     g 
 gcuauu gcu   gag ggaaug  gucugguuc aggucucgc    gauuuaagga uga    ugcau g
 |||||| |||   ||| ||||||  ||||||||| |||||||||    |||||||||| |||    ||||| c
 cgauaa cga   cuC CCUUAC  CGGACCAGG Ucuagggug    cuaaguuccu auu    augug a
-      -   ---   C      UU         C         ---u          u   uuug     u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssp-miR166

• Accession: MIMAT0030451
• Description: Saccharum sp. ssp-miR166 mature miRNA
• Sequence: 109 - UCGGACCAGGCUUCAUUCCCC - 129
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23071617
   microRNAs associated with drought response in the bioenergy crop sugarcane (Saccharum spp.)
   Ferreira TH, Gentile A, Vilela RD, Costa GG, Dias LI, Endres L, Menossi M
   PLoS One (2012) 7:e46703