miRBase entry: prd-mir-100

Stem-loop prd-mir-100


Accession
MI0025548
Description
Panagrellus redivivus prd-mir-100 precursor miRNA


Sequence

AACCCGUAGAUCCGAACUUGUGUUcugucaacaagaaaCACAUCUUCGGGUAUGGGUCGG
.((((((..(((((((..((((((((.......)).))))))..)))))))))))))...

Structure
--A      AG       CU      -  gu 
   ACCCGU  AUCCGAA  UGUGUU cu  c
   ||||||  |||||||  |||||| ||  a
   UGGGUA  UGGGCUU  ACACaa ga  a
GGC      --       CU      a  ac 


Annotation confidence Not enough data
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Genome context
KB454933.1: 109204-109263 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from prd-mir-100
Name Accession Chromosome Start End Strand Confidence




Database links

Mature prd-miR-100-5p

Accession MIMAT0030454
Description Panagrellus redivivus prd-miR-100-5p mature miRNA
Sequence 1 - AACCCGUAGAUCCGAACUUGUGUU - 24
Evidence experimental
Illumina [1]

Mature prd-miR-100-3p

Accession MIMAT0030455
Description Panagrellus redivivus prd-miR-100-3p mature miRNA
Sequence 39 - CACAUCUUCGGGUAUGGGUCGG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295