miRBase entry: prd-lin-4

Stem-loop prd-lin-4


Accession
MI0025549
Description
Panagrellus redivivus prd-lin-4 precursor miRNA


Sequence

UCCCUGAGACUAUAGCUGUGacggccaaguugaaacucACGGACUAUAGUGUCGGGAAUG
..(((((.(((((((((((((((((...))))....)))))).))))))).)))))....

Structure
--UC     G       -      ----    c 
    CCUGA ACUAUAG CUGUGa    cggc  
    ||||| ||||||| ||||||    |||| a
    GGGCU UGAUAUC GGCAcu    guug  
GUAA     G       A      caaa    a 


Annotation confidence Not enough data
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Genome context
KB455497.1: 10809-10868 [-]

Database links

Mature prd-lin-4-5p

Accession MIMAT0030456
Description Panagrellus redivivus prd-lin-4-5p mature miRNA
Sequence 1 - UCCCUGAGACUAUAGCUGUG - 20
Evidence experimental
Illumina [1]

Mature prd-lin-4-3p

Accession MIMAT0030457
Description Panagrellus redivivus prd-lin-4-3p mature miRNA
Sequence 39 - ACGGACUAUAGUGUCGGGAAUG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23410827
    The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
    "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
    "Genetics (2013) 193:1279-1295