Stem-loop prd-mir-5960

Accession

MI0025553

Description

Panagrellus redivivus prd-mir-5960 precursor miRNA

Sequence

AGUGGUCCGAAGACAGUGGGUUaccgaccaaauacCCCAUUGUCGCUCCCUUGACCACUUUU
(((((((.((.(((((((((...............)))))))))..))....)))))))...

Structure

---       ---C  -A         UUaccg 
   AGUGGUC    GA  GACAGUGGG      a
   |||||||    ||  |||||||||      c
   UCACCAG    CU  CUGUUACCC      c
UUU       UUCC  CG         cauaaa 

Annotation confidence Not enough data

Genome context

KB454920.1: 75186-75247 [+]

Mature prd-miR-5960-5p

• Accession: MIMAT0030464
• Description: Panagrellus redivivus prd-miR-5960-5p mature miRNA
• Sequence: 1 - AGUGGUCCGAAGACAGUGGGUU - 22
• Evidence: experimental ; Illumina [1]

Mature prd-miR-5960-3p

• Accession: MIMAT0030465
• Description: Panagrellus redivivus prd-miR-5960-3p mature miRNA
• Sequence: 36 - CCCAUUGUCGCUCCCUUGACCACUUUU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295