Stem-loop prd-mir-5359

Accession

MI0025555

Description

Panagrellus redivivus prd-mir-5359 precursor miRNA

Sequence

UCUGGGAUUUUUUAUAUUGGUauugacuuuggaaacuaCCAAUAUAAAUCAUUCUAGUAC
.(((((((..((((((((((((((..(...)..)).))))))))))))..)))))))...

Structure

--U       UU            -  ga u 
   CUGGGAU  UUUAUAUUGGUa uu  c  
   |||||||  |||||||||||| ||  | u
   GAUCUUA  AAAUAUAACCau aa  g  
CAU       CU            c  ag u 

Annotation confidence Not enough data

Genome context

KB455188.1: 47142-47201 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from prd-mir-5359

Mature prd-miR-5359-5p

• Accession: MIMAT0030468
• Description: Panagrellus redivivus prd-miR-5359-5p mature miRNA
• Sequence: 1 - UCUGGGAUUUUUUAUAUUGGU - 21
• Evidence: experimental ; Illumina [1]

Mature prd-miR-5359-3p

• Accession: MIMAT0030469
• Description: Panagrellus redivivus prd-miR-5359-3p mature miRNA
• Sequence: 39 - CCAAUAUAAAUCAUUCUAGUAC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23410827
   The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle
   "Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW"
   "Genetics (2013) 193:1279-1295